You are seeing a lag in altitude in dynamic situations. What I'm trying to discern first is whether or not you have an offset issue or a "lag" issues.
Let me ask the question a different way. When you are holding an altitude - in other words not climbing or descending - does your barometric altimeter match the EFIS, or are they hundreds of feet off?
Then, let's say you descent 2000 feet at 500fpm, how do the two altimeters compare 1) when you have descended 1000 feet and are still descending 2) As you level off 200 feet lower, and 3) After you have stabilized at your new lower altitude, without climbing or descending any further.
Even better, can you take a video of the behavior and send it to us at support at dynonavionics dot com?