Our AOA calibration routine and the resulting AOA display was designed with simplicity in mind. You show it what a low AOA looks like, and that's the "full bar". You show it what high (critical) AOA looks like, and that's the other side of the indication where you're getting the flashing chevron. The rest of the AOA gradient is then smoothly interpolated in between those points.
The trade-off for this simplified calibration procedure is that the precise L/D AOA for the airfoil isn't explicitly determined during that procedure. It's surely possible to to have such a calibration procedure, but the procedural and software complexity goes up quite a bit. In fact, our sister company - AFS - has such a procedure for their line of AOA probes (see http://www.advanced-flight-systems.com/Support/AOAsupport/AOA%20Manual%20rev4.pdf for the nitty gritty details).
So without that facility, you can still do the normal Dynon calibration procedure, and then determine best L/D using another more conventional method (of which there are a few available via various EAA articles) to arrive at a best glide speed for your aircraft. Once you have that, simply note the state of the AOA indicator, and that's your best L/D AOA. Note that that particular AOA indication will vary from airplane to airplane.