First thing to do is solve your "runs on the hot side" matters.
For a start, and I openly declare, I am not a fan of any of the currently available EI systems, I can go on for ages about why but that is not the topic here now.
So first of all, make sure the timing is on the most conservative setting and even then retard it a few degrees. Make sure your magneto is timed accurately too.
Do you have a CS prop? if so do you see fuel flow of 18GPH (assuming a 180HP at sea level?)
once you have a known conforming engine setup, then start working on baffles etc. Most folk with a plenum seem to think they will have better cooling. They do not. They may have less cooling drag, but often higher CHT's.
This is only the tip of the iceberg.
As for other GP inputs there are a couple, have a read of the manual at the end of section 3
You may configure the FlightDEK-D180 to monitor one J or K type thermocouple. Dynon Avionics does not supply a specific general purpose thermocouple probe for this purpose. However, our standard EGT and CHT probes will work, as will any other J or K type thermocouple.
Dynon Avionics sells both J and K type thermocouple wire which may be used to connect the desired thermocouple to the FlightDEK-D180. Ensure you order the correct wire type for the thermocouple you intend to use. Crimp a female D-sub pin on the end of each wire, and plug them into the D37 connector. Polarity is important, so ensure that you are routing the positive side (yellow for K-type; white for J-type) of the thermocouple to pin 27 on the 37-pin harness, and the negative side to pin 28